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De Novo Pathway-Based Classification of Breast Cancer Subtypes

Publikation: Bidrag til bog/antologi/rapportBidrag til bog/antologiForskningfagfællebedømt

Breast cancer is a heterogeneous disease for which various clinically relevant subtypes have been reported. These subtypes are characterized by molecular differences which direct treatment selection. The state of the art for breast cancer subtyping utilizes histochemistry or gene expression to measure a few selected markers. However, classification based on molecular pathways (rather than individual markers) is a more robust way to classify breast cancer samples into known subtypes. Here, we present PathClass, a web application that allows its users to predict breast cancer subtypes using various traditional as well as advanced methods. This includes methods based on classical gene expression panels as well as de novo pathway-based predictors. Users can predict labels for datasets in the Gene Expression Omnibus or upload their own expression profiling data. Availability: https://pathclass.compbio.sdu.dk/.

OriginalsprogEngelsk
TitelProtein-Protein Interaction Networks : Methods and Protocols
RedaktørerStefan Canzar, Francisca Rojas Ringeling
Antal sider13
ForlagHumana Press
Publikationsdato2020
Sider201-213
Kapitel15
ISBN (Trykt)978-1-4939-9872-2
ISBN (Elektronisk)978-1-4939-9873-9
DOI
StatusUdgivet - 2020
NavnMethods in Molecular Biology
Vol/bind2074
ISSN1064-3745

ID: 230742706